Index of /DIGdata/MAX4Img_PowderAveraging/CrossingFibre_XNH_data/CrossingFibre_Segmentation_voxSize_200nm

[ICO]NameLast modifiedSize
[PARENTDIR]Parent Directory  -
[   ]crossingFibre_DS2_200nm_intensity.nii2021-12-02 14:18 1.0G
[   ]crossingFibre_DS2_200nm_segmentation.nii2021-12-02 14:21 1.0G
[TXT]README.html2021-12-02 16:55 961

CrossingFibre_Segmentation_voxSize_200nm

The folder "CrossingFibre_Segmentation_voxSize_200nm" contains the following 2 entries:

  1. "crossingFibre_DS2_200nm_intensity.nii" Dim: [1024 1024 1024], voxel size: [200 200 200] nm
    Contains downsampled (factor of 2) and smoothed version of the raw XNH volume in the directory "CrossingFibre_Intensity_voxSize_100nm".

  2. "crossingFibre_DS2_200nm_segmentation.nii" Dim: [1024 1024 1024], voxel size: [200 200 200] nm
    Contains of segmentation 58 axons in the downsampled volume.

File 1 was downsampled for the segmentation of axons. It was downsampled to a size of 1024 x 1024 x 1024 by converting the raw data to uint8 and then downsampling by a factor of 2 with cubic interpolation. Originally, the bounding boxes of each axon were downsampled and segmented separately, but the volume is provided in its entirety here.